Open Problems in Complexity and Graph Theory

Links

Warning, several of the following sites aren't regularly updated and some of the problems may no longer be open. As you should be doing anyhow, always, at least, skim the papers on the topic before trying to solve it on your own, save for a few minutes to hours of initial pondering.
http://en.wikipedia.org/wiki/List_of_open_problems_in_computer_science
http://maven.smith.edu/~orourke/TOPP/Welcome.html
http://compgeom.cs.uiuc.edu/~jeffe/open/
http://www.math.fau.edu/locke/Unsolved.htm
Algorithmic Theory of Random graphs - Frieze and McDiarmid
http://garden.irmacs.sfu.ca/
The Homepage of Nearest Neighbors and Similarity Search, Open Problems
http://www.geocities.com/ednitou/
http://www.ics.uci.edu/~eppstein/junkyard/open.html
Some Open Problems [in graph algorithms]
http://users.encs.concordia.ca/~chvatal/perfect/problems.html
A summary of The diameter of random sparse graphs by W. Aiello, Fan Chung and Lincoln Lu
http://www.cs.clemson.edu/~hedet/preface.html
http://www.brics.dk/LS/01/1/
http://algo.inria.fr/AofA/Problems/index.html
http://tlca.di.unito.it/opltlca/
http://weblog.fortnow.com/2003/03/berman-hartmanis-isomorphism.html
http://in-theory.blogspot.com/2006/10/limitations-of-linear-and-semidefinite.html
Open Problems for Undergraduates
Open Problems - Graph Theory and Combinatorics collected and maintained by Douglas B. West

Some of the most noteworthy problems in my opinion

Open problems for undergrads and advanced high schoolers

Here you may find some problems that are understandable by undergrads and advanced high schoolers, and for which the chance for these of solving is comparable to that of a more experienced researcher (without implying that the chance is substantial). Note that these problem are not necessarily the complete mathematical problems but rather particularly simple and important subproblems that researchers are still struggling with.